Survival-associated eQTLs across different cancer types
We identified 22,212 eQTLs associated with patient overall survival across different cancer types at FDR < 0.05.
|
Cancer type
|
SNP ID
|
SNP position (hg19)
|
Alleles (A/a)
|
log-rank test p-value
|
Sample size
|
Median survival time AA
|
Median survival time Aa
|
Median survival time aa
|
|
|---|---|---|---|---|---|---|---|---|---|
| LIHC | rs12280157 | chr11:70843171 | A/G | 3.37E-5 | 189 | 13.8 | 2.63 | 0 | KM Plot |
| LIHC | rs12286150 | chr11:70843199 | G/T | 3.37E-5 | 189 | 13.8 | 2.63 | 0 | KM Plot |
| LIHC | rs12294761 | chr11:70850504 | T/A | 0.000186 | 190 | 13.8 | 3.68 | 0 | KM Plot |
| LIHC | rs12296574 | chr12:112322777 | T/C | 3.04E-5 | 192 | 12.57 | 14.9 | 5.17 | KM Plot |
| LIHC | rs12302040 | chr12:112288179 | G/A | 6.38E-6 | 192 | 12.57 | 14.98 | 4.03 | KM Plot |
| LIHC | rs12305655 | chr12:112398188 | T/C | 6.38E-6 | 191 | 12.57 | 14.98 | 5.17 | KM Plot |
| LIHC | rs12305667 | chr12:112398451 | A/G | 6.38E-6 | 191 | 12.57 | 14.98 | 5.17 | KM Plot |
| LIHC | rs12306584 | chr12:112272776 | C/T | 6.38E-6 | 192 | 12.57 | 14.98 | 4.03 | KM Plot |
| LIHC | rs12306710 | chr12:112272981 | C/T | 6.38E-6 | 192 | 12.57 | 14.98 | 4.03 | KM Plot |
| LIHC | rs12306814 | chr12:112403813 | T/C | 6.38E-6 | 191 | 12.57 | 14.98 | 5.17 | KM Plot |
| LIHC | rs12307192 | chr12:112290346 | G/T | 6.38E-6 | 192 | 12.57 | 14.98 | 4.03 | KM Plot |
| LIHC | rs12307365 | chr12:112290651 | G/C | 6.38E-6 | 192 | 12.57 | 14.98 | 4.03 | KM Plot |
| LIHC | rs12307393 | chr12:112364028 | T/A | 6.38E-6 | 192 | 12.57 | 14.98 | 4.03 | KM Plot |
| LIHC | rs12308660 | chr12:112356735 | G/A | 6.38E-6 | 192 | 12.57 | 14.98 | 4.03 | KM Plot |
| LIHC | rs12308907 | chr12:10058244 | C/T | 7.09E-5 | 189 | 13.85 | 8.67 | 4.3 | KM Plot |